date_utc=20261013T092424Z
gateway_base=https://ferrum.demo.synapticfour.tech
helixtest=helixtest 0.1.0
reproduce<<EOF
GATEWAY_BASE=https://ferrum.demo.synapticfour.tech helixtest --all --mode ferrum --report table --fail-level 2
EOF
---
HelixTest — GA4GH Conformance Suite
Synaptic Four · Apache-2.0

Enabled services: WES, TES, DRS, TRS, Beacon, htsget, Auth, Age, Crypt4GH, E2E
Executed modules: WES, TES, DRS, TRS, Beacon, htsget, Auth, Age, Crypt4GH, E2E

Service   Level   Details
=======   =====   =======
WES 1       WES lifecycle success echo (API may show QUEUED/INITIALIZING/RUNNING before COMPLETE): POST https://ferrum.demo.synapticfour.tech/ga4gh/wes/v1/runs failed with HTTP 401 Unauthorized: {"msg": "Bearer required"} | WES failure state for bad workflow: POST https://ferrum.demo.synapticfour.tech/ga4gh/wes/v1/runs failed with HTTP 401 Unauthorized: {"msg": "Bearer required"} | WES missing inputs leads to error state: POST https://ferrum.demo.synapticfour.tech/ga4gh/wes/v1/runs failed with HTTP 401 Unauthorized: {"msg": "Bearer required"} | WES incompatible workflow_type leads to error state: POST https://ferrum.demo.synapticfour.tech/ga4gh/wes/v1/runs failed with HTTP 401 Unauthorized: {"msg": "Bearer required"} | WES invalid workflow leads to error state: POST https://ferrum.demo.synapticfour.tech/ga4gh/wes/v1/runs failed with HTTP 401 Unauthorized: {"msg": "Bearer required"} | WES scatter/gather workflow: POST https://ferrum.demo.synapticfour.tech/ga4gh/wes/v1/runs failed with HTTP 401 Unauthorized: {"msg": "Bearer required"}
TES 0       TES /tasks reachable: Unexpected HTTP status: 404 Not Found | TES task schema (create + status): TES task submission failed: 401 Unauthorized | TES task lifecycle + checksum (non-terminal states allowed until terminal): TES task submission failed: 401 Unauthorized
DRS 0       DRS object endpoint reachable: Unexpected HTTP status: 404 Not Found | DRS DrsObject OpenAPI + access_methods: GET https://ferrum.demo.synapticfour.tech/ga4gh/drs/v1/objects/test-object-1 failed with HTTP 404 Not Found: {"error":"404","message":"not found: object not found: test-object-1"} | DRS checksum correctness: GET https://ferrum.demo.synapticfour.tech/ga4gh/drs/v1/objects/test-object-1 failed with HTTP 404 Not Found: {"error":"404","message":"not found: object not found: test-object-1"} | DRS HTTP Range support: GET https://ferrum.demo.synapticfour.tech/ga4gh/drs/v1/objects/test-object-1 failed with HTTP 404 Not Found: {"error":"404","message":"not found: object not found: test-object-1"}
TRS 2       OK
Beacon 1       Beacon known variant exists: Beacon expected to report existence for known test variant, but exists=false
htsget 0       htsget GET reads ticket (BAM + DRS stream URL): GET https://ferrum.demo.synapticfour.tech/ga4gh/htsget/v1/reads/test-object-1 returned HTTP 404 Not Found — expected 200 for reads object "test-object-1". Body: {"htsget":{"error":"NotFound","message":"no object for id \"test-object-1\""}} | htsget GET variants ticket (VCF/BCF + DRS stream URL): GET https://ferrum.demo.synapticfour.tech/ga4gh/htsget/v1/variants/demo-sample-vcf returned HTTP 404 Not Found — expected 200 for VCF object "demo-sample-vcf" (set HTSGET_VARIANTS_OBJECT_ID if your seed differs). Body: {"htsget":{"error":"NotFound","message":"no object for id \"demo-sample-vcf\""}} | htsget POST reads ticket (JSON body, no query): POST https://ferrum.demo.synapticfour.tech/ga4gh/htsget/v1/reads/test-object-1 expected 2xx, got 404 Not Found body {"htsget":{"error":"NotFound","message":"no object for id \"test-object-1\""}} | htsget POST variants ticket (JSON body, no query): POST https://ferrum.demo.synapticfour.tech/ga4gh/htsget/v1/variants/demo-sample-vcf expected 2xx, got 404 Not Found body {"htsget":{"error":"NotFound","message":"no object for id \"demo-sample-vcf\""}} | htsget GET reads ?format=CRAM on BAM object → UnsupportedFormat: expected HTTP 400 UnsupportedFormat for CRAM on BAM object "test-object-1", got 404 Not Found err=Some("NotFound") body {"htsget":{"error":"NotFound","message":"no object for id \"test-object-1\""}} | SKIP htsget dataset auth (403 without token, 200 with Passport/JWT): skipped: set HELIXTEST_HTSGET_DATASET_OBJECT_ID (and HELIXTEST_HTSGET_DATASET_BEARER for success path) to test Ferrum dataset-gated htsget when FERRUM_AUTH__REQUIRE_AUTH=true
Auth 0       Auth /service-info reachable (auth_url): error sending request for url (http://localhost:8085/service-info): error trying to connect: tcp connect error: Connection refused (os error 61) | SKIP Auth (HMAC JWT fixture): valid token grants DRS access: skipped: HELIXTEST_SHARED_SECRET unset; HMAC JWT fixture not run (not Passports) | SKIP Auth (HMAC JWT fixture): expired token rejected: skipped: HELIXTEST_SHARED_SECRET unset; HMAC JWT fixture not run (not Passports) | SKIP Auth (HMAC JWT fixture): garbage bearer rejected: skipped: HELIXTEST_SHARED_SECRET unset; HMAC JWT fixture not run (not Passports) | SKIP Auth (HMAC JWT fixture): wrong scope denied: skipped: HELIXTEST_SHARED_SECRET unset; HMAC JWT fixture not run (not Passports) | Auth (HMAC JWT fixture): missing token returns 401: Missing token must return 401 Unauthorized, got 404 Not Found
Age 5       OK
Crypt4GH 0       SKIP Crypt4GH HTTP checks enabled: skipped: set HELIXTEST_FEATURE_CRYPT4GH_REWRAP=1 | SKIP Crypt4GH DRS rewrap download (X-Crypt4GH-Public-Key): skipped: set HELIXTEST_FEATURE_CRYPT4GH_REWRAP=1 and CRYPT4GH_CLIENT_SECRET_KEY_PATH to run Ferrum rewrap integration | SKIP Crypt4GH plain download matches rewrap plaintext (decrypt_plain): skipped: set HELIXTEST_FEATURE_CRYPT4GH_PLAIN=1 with C4_PLAIN_DOWNLOAD_URL or C4_PLAIN_URL_BASE (+ optional C4_PLAIN_URL_PATH) when Ferrum decrypt_plain is enabled
E2E 0       E2E TRS→DRS→WES→DRS output→Beacon (WES polled to terminal; no TES poll in this module): GET https://ferrum.demo.synapticfour.tech/ga4gh/drs/v1/objects/01M4T7JNASMNP9EJ53RJN3GCCB-01M4T7JNASDXYQMT0V765MJTME-input failed with HTTP 404 Not Found: {"error":"404","message":"not found: object not found: 01M4T7JNASMNP9EJ53RJN3GCCB-01M4T7JNASDXYQMT0V765MJTME-input"}