APIs and standards
GA4GH surfaces on Ferrum and ga4gh-infra, with HelixTest notes from the published public report. Synaptic Four APIs that are not GA4GH standards are listed separately.
HelixTest and green health checks are technical signals. They are not GA4GH certification, endorsement, or a clinical attestation.
GA4GH APIs on this host
| API | Version / profile | service-info / entry | Auth | HelixTest (published) |
|---|---|---|---|---|
| DRS | 1.x | ferrum/ga4gh/drs/v1/service-info (raw API response) | Passport / Bearer for mutations and most object reads | Fixture object ids often 404 on Contabo seed; auth paths need Bearer |
| Beacon | v2 | ferrum/ga4gh/beacon/v2/service-info (raw API response) | Anonymous service-info; queries may be restricted | service-info OK; known-variant fixture may not match Contabo index |
| htsget | 1.x | ferrum/ga4gh/htsget/v1/service-info (raw API response) | Passport / Bearer for mutations and most object reads | Needs Contabo object ids (not HelixTest defaults) |
| WES | 1.0 | ferrum/ga4gh/wes/v1/service-info (raw API response) | service-info open; mutations via execution-gate + Passport | Mutations require Bearer; ladder expects open POST |
| TES | 1.x | ferrum/ga4gh/tes/v1/service-info (raw API response) | service-info open; mutations via execution-gate + Passport | Mutations require Bearer; ladder expects open POST |
| TRS | 2.x | ferrum/ga4gh/trs/v2/service-info (raw API response) | Public read on this demo | TRS list/versions OK on Contabo |
| Service Registry | 1.x | registry/services (raw API response) | Public read on this demo | Covered via directory / service list |
| AAI Broker | OIDC / Passport | broker/service-info (raw API response) | OIDC / Passport issuer | Broker service-info; Auth module may skip without HMAC fixture |
HelixTest conformance page · Raw latest HelixTest report (raw API response)
Synaptic Four and suite APIs
These endpoints are part of the demo stack but are not GA4GH standard APIs.
| API | Base path | Notes |
|---|---|---|
| Solum (via site-api BFF) | /site-api/clinical/… | Consent, FHIR Patient, subject-link; steward/clinician/auditor Passports |
| Access Decision Service | /site-api/access/… and ADS DAC | Playground secondary-use apply / approve / reject |
| Execution gate | /execution/v1/… · /ga4gh/wes|tes (mutations) | Allowlisted checksum/bcftools only; NetworkMode=none |
| HELIOS reports | /execution-reports/ · HELIOS dashboard proxy | Ed25519 signed JSON; RO-Crate/PDF not on this BFF |
| Site BFF | /site-api/auth/… | Session cookie after broker login; CSRF on mutations |
| DUO service | /duo/ | Proxied suite service |
| Agreement registry | /agreements/ | GET-only public proxy |
| Sample resource | /sample/ | Clearinghouse / Passport consumer demo |